Transcript: LINC01653:3

Basic information

LNCipedia transcript ID: LINC01653:3 
HGNC Gene Symbol: LINC01653    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1653
Ensembl Gene ID: ENSG00000232100
Ensembl Transcript ID: ENST00000456026
RefSeq ID: NR_110794
Location (hg38): chr1:218043505-218059140
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1728 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000393; ENST00000456026; ENST00000456026.1; RP11-152L7.2-001; OTTHUMT00000095286.1; NONHSAT009511; NR_110794; NR_110794.1
Alternative gene names: XLOC_000563; linc-RRP15-2; ENSG00000232100; RP11-152L7.2; ENSG00000232100.1; OTTHUMG00000039496.1; LINC01653; LOC101929631


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4802 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01653:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPATA17-3:1
3.1 lnc-SPATA17-4:1
4.0 lnc-SPATA17-4:1
4.1 lnc-SPATA17-4:1
5.0 lnc-SPATA17-4:1
5.1 LINC01653:2
5.2 LINC01653:3