Transcript: LINC01654:4

Basic information

LNCipedia transcript ID: LINC01654:4 
HGNC Gene Symbol: LINC01654    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1654
Ensembl Gene ID: ENSG00000261781
Ensembl Transcript ID: ENST00000569711
RefSeq ID: NR_125946
Location (hg38): chr1:18065657-18074412
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2471 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000569711.1; RP11-174G17.2-001; OTTHUMT00000431027.1; NONHSAT001258; NR_125946.1
Alternative gene names: ENSG00000261781.1; RP11-174G17.2; OTTHUMG00000175750.1; LINC01654; LOC101927876


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6412 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01654:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IGSF21-2:1
4.0 lnc-IGSF21-2:1
4.1 lnc-IGSF21-2:1
5.0 lnc-IGSF21-2:1
5.1 LINC01654:2
5.2 LINC01654:4