Transcript: LINC01661:5

Basic information

LNCipedia transcript ID: LINC01661:5 
LNCipedia gene ID: LINC01661
Location (hg38): chr1:106818239-106838193
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 734 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415910; ENST00000415910.1; RP11-233E12.1-001-001; OTTHUMT00000001239.1; NONHSAT004950
Alternative gene names: ENSG00000237460; RP11-233E12.1-001; ENSG00000237460.1; OTTHUMG00000000497.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.7642 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01661:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRMT6-1:1
3.1 lnc-PRMT6-1:1
4.0 lnc-PRMT6-1:1
4.1 lnc-PRMT6-1:1
5.0 lnc-PRMT6-1:1
5.1 LINC01661:2
5.2 LINC01661:5