Transcript: LINC01661:6

Basic information

LNCipedia transcript ID: LINC01661:6 
HGNC Gene Symbol: LINC01661    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1661
Ensembl Gene ID: ENSG00000237460
Ensembl Transcript ID: ENST00000415910
Location (hg38): chr1:106818239-106838167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415910.2
Alternative gene names: ENSG00000237460.2; RP11-233E12.1; LINC01661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.7642 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01661:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRMT6-1:2
4.0 lnc-PRMT6-1:2
4.1 lnc-PRMT6-1:2
5.0 lnc-PRMT6-1:2
5.1 LINC01661:3
5.2 LINC01661:6