Transcript: LINC01665:6

Basic information

LNCipedia transcript ID: LINC01665:6 
HGNC Gene Symbol: LINC01665    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1665
Ensembl Gene ID: ENSG00000235343
Ensembl Transcript ID: ENST00000422917
Location (hg38): chr22:16746869-16748645
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1241 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422917; ENST00000422917.1; AC005301.8-001; OTTHUMT00000331389.1; NONHSAT083152
Alternative gene names: ENSG00000235343; AC005301.8; ENSG00000235343.1; OTTHUMG00000153504.1; LINC01665


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.3282 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01665:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XKR3-1:1
3.1 lnc-XKR3-1:1
4.0 lnc-XKR3-1:1
4.1 lnc-XKR3-1:1
5.0 lnc-XKR3-1:1
5.1 LINC01665:2
5.2 LINC01665:6