Transcript: LINC01669:11

Basic information

LNCipedia transcript ID: LINC01669:11 
HGNC Gene Symbol: LINC01669    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1669
Ensembl Gene ID: ENSG00000280191
Ensembl Transcript ID: ENST00000623161
Location (hg38): chr21:6073348-6076153
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623161.3
Alternative gene names: ENSG00000280191.3; CH507-42P11.5; ; LINC01669


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.52 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01669:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00313:23
4.1 LINC00313:23
5.0 LINC00313:23
5.1 LINC01669:6
5.2 LINC01669:11