Transcript: LINC01671:2

Basic information

LNCipedia transcript ID: LINC01671:2 
LNCipedia gene ID: LINC01671
RefSeq ID: NR_131192
Location (hg38): chr21:42599404-42615095
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1688 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131192.1
Alternative gene names: LOC101928233


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.1518 non-coding 
CPAT coding probability 6.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01671:2 no no no no

Available literature

  1. Wang (2018), Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses., Mol Med Rep
  2. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01671:2
5.1 LINC01671:2
5.2 LINC01671:2