Transcript: LINC01671:9

Basic information

LNCipedia transcript ID: LINC01671:9 
HGNC Gene Symbol: LINC01671    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1671
Ensembl Gene ID: ENSG00000225431
Ensembl Transcript ID: ENST00000419628
Location (hg38): chr21:42599280-42615058
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1775 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419628; ENST00000419628.1; AP001626.1-001; OTTHUMT00000195400.1
Alternative gene names: ENSG00000225431; AP001626.1; ENSG00000225431.1; OTTHUMG00000086813.1; LINC01671


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.1518 non-coding 
CPAT coding probability 12.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01671:9 no no no no

Available literature

  1. Wang (2018), Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses., Mol Med Rep
  2. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RSPH1-1:1
3.1 lnc-RSPH1-2:1
4.0 lnc-RSPH1-2:1
4.1 lnc-RSPH1-2:1
5.0 lnc-RSPH1-2:1
5.1 LINC01671:5
5.2 LINC01671:9