Transcript: LINC01673:9

Basic information

LNCipedia transcript ID: LINC01673:9 
HGNC Gene Symbol: LINC01673    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1673
Ensembl Gene ID: ENSG00000234052
Ensembl Transcript ID: ENST00000426418
Location (hg38): chr21:27638693-27653491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 468 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028825; ENST00000426418; ENST00000426418.1; AP001607.1-001; OTTHUMT00000171682.1; NONHSAT081580
Alternative gene names: XLOC_013896; linc-USP16-9; ENSG00000234052; AP001607.1; ENSG00000234052.1; OTTHUMG00000078707.1; LINC01673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.4844 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01673:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-7:3
3.1 lnc-USP16-7:3
4.0 lnc-USP16-7:3
4.1 lnc-USP16-7:3
5.0 lnc-USP16-7:3
5.1 LINC01673:5
5.2 LINC01673:9