Transcript: LINC01675:3

Basic information

LNCipedia transcript ID: LINC01675:3 
HGNC Gene Symbol: LINC01675    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1675
Ensembl Gene ID: ENSG00000234142
Ensembl Transcript ID: ENST00000426519
Location (hg38): chr1:166475772-166490039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 701 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426519; ENST00000426519.1; RP11-276E17.2-001; OTTHUMT00000081457.1; NONHSAT007362
Alternative gene names: ENSG00000234142; RP11-276E17.2; ENSG00000234142.1; OTTHUMG00000033267.1; LINC01675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.0406 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01675:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM78B-2:1
3.1 lnc-FAM78B-2:1
4.0 lnc-FAM78B-2:1
4.1 lnc-FAM78B-2:1
5.0 lnc-FAM78B-2:1
5.1 LINC01675:2
5.2 LINC01675:3