Transcript: LINC01677:10

Basic information

LNCipedia transcript ID: LINC01677:10 
HGNC Gene Symbol: LINC01677    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1677
Ensembl Gene ID: ENSG00000233047
Ensembl Transcript ID: ENST00000429080
Location (hg38): chr1:105927624-106023212
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429080; ENST00000429080.1; RP11-24P14.1-001; OTTHUMT00000030357.1; NONHSAT004932
Alternative gene names: ENSG00000233047; RP11-24P14.1; ENSG00000233047.1; OTTHUMG00000011006.2; ENSG00000233047.6; LINC01677


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.5886 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01677:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAV3-2:1
3.1 lnc-VAV3-2:1
4.0 lnc-VAV3-2:1
4.1 lnc-VAV3-2:1
5.0 lnc-VAV3-2:1
5.1 LINC01677:4
5.2 LINC01677:10