Transcript: LINC01678:16

Basic information

LNCipedia transcript ID: LINC01678:16 
HGNC Gene Symbol: LINC01678    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1678
Ensembl Gene ID: ENSG00000225331
Ensembl Transcript ID: ENST00000424921
Location (hg38): chr21:44159015-44160076
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 475 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028954; ENST00000424921; ENST00000424921.1; AP001055.6-001; OTTHUMT00000195818.1; NONHSAT082483
Alternative gene names: XLOC_014110; linc-CSTB-1; ENSG00000225331; AP001055.6; ENSG00000225331.1; OTTHUMG00000086913.1; LINC01678


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.312 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01678:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICOSLG-6:3
3.1 lnc-ICOSLG-6:3
4.0 lnc-ICOSLG-6:3
4.1 lnc-ICOSLG-6:3
5.0 lnc-ICOSLG-6:3
5.1 LINC01678:6
5.2 LINC01678:16