Transcript: LINC01679:12

Basic information

LNCipedia transcript ID: LINC01679:12 
LNCipedia gene ID: LINC01679
Location (hg38): chr21:43359346-43360651
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029158; NONHSAT082400
Alternative gene names: XLOC_014102; linc-U2AF1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.9207 non-coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01679:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-5:4
3.1 lnc-SIK1-5:4
4.0 lnc-SIK1-5:4
4.1 lnc-SIK1-5:4
5.0 lnc-SIK1-5:4
5.1 LINC01679:7
5.2 LINC01679:12