Transcript: LINC01679:9

Basic information

LNCipedia transcript ID: LINC01679:9 
HGNC Gene Symbol: LINC01679    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1679
Ensembl Gene ID: ENSG00000237989
Ensembl Transcript ID: ENST00000442815
Location (hg38): chr21:43358147-43362349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2798 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028946; ENST00000442815; ENST00000442815.1; AP001046.5-001; OTTHUMT00000195623.1; NONHSAT082399
Alternative gene names: XLOC_014102; linc-U2AF1-2; ENSG00000237989; AP001046.5; ENSG00000237989.1; OTTHUMG00000086865.1; TCONS_00029157; LINC01679


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.8645 non-coding 
CPAT coding probability 10.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01679:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-5:2
3.1 lnc-SIK1-5:2
4.0 lnc-SIK1-5:2
4.1 lnc-SIK1-5:2
5.0 lnc-SIK1-5:2
5.1 LINC01679:3
5.2 LINC01679:9