Transcript: LINC01684:29

Basic information

LNCipedia transcript ID: LINC01684:29 
LNCipedia gene ID: LINC01684
Location (hg38): chr21:24484062-24497030
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12969 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: kl_uc002yll_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.4864 non-coding 
CPAT coding probability 29.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01684:29 no no no no

Available literature

  1. Sookoian (2017), Genetic variation in long noncoding RNAs and the risk of nonalcoholic fatty liver disease., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JAM2-6:6
4.0 lnc-JAM2-6:6
4.1 lnc-JAM2-6:6
5.0 lnc-JAM2-6:6
5.1 LINC01684:16
5.2 LINC01684:29