Transcript: LINC01685:7

Basic information

LNCipedia transcript ID: LINC01685:7 
HGNC Gene Symbol: LINC01685    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1685
Ensembl Gene ID: ENSG00000238063
Ensembl Transcript ID: ENST00000634464
Location (hg38): chr1:38474879-38496034
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1201 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634464.1
Alternative gene names: ENSG00000238063.2; RP11-329N22.1; LINC01685


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.6882 non-coding 
CPAT coding probability 3.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01685:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-UTP11L-5:3
4.1 lnc-UTP11L-5:3
5.0 lnc-UTP11L-5:3
5.1 LINC01685:3
5.2 LINC01685:7