Transcript: LINC01686:5

Basic information

LNCipedia transcript ID: LINC01686:5 
HGNC Gene Symbol: LINC01686    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1686
Ensembl Gene ID: ENSG00000261504
Ensembl Transcript ID: ENST00000566297
Location (hg38): chr1:182615254-182616629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1376 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566297.1; RP11-317P15.4-001; OTTHUMT00000431576.1
Alternative gene names: ENSG00000261504.1; RP11-317P15.4; OTTHUMG00000176155.1; LINC01686


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.5889 non-coding 
CPAT coding probability 67.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01686:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGSL1-2:1
4.0 lnc-RGSL1-2:1
4.1 lnc-RGSL1-2:1
5.0 lnc-RGSL1-2:1
5.1 LINC01686:3
5.2 LINC01686:5