Transcript: LINC01687:16

Basic information

LNCipedia transcript ID: LINC01687:16 
HGNC Gene Symbol: LINC01687    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1687
Ensembl Gene ID: ENSG00000233215
Ensembl Transcript ID: ENST00000419467
Location (hg38): chr21:22041174-22054369
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419467; ENST00000419467.1; AP000472.2-002; OTTHUMT00000171044.1; NONHSAT081389
Alternative gene names: ENSG00000233215; AP000472.2; ENSG00000233215.1; OTTHUMG00000078243.1; ENSG00000233215.5; LINC01687


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8272 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01687:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-14:2
3.1 lnc-TMPRSS15-14:2
4.0 lnc-MRPL39-38:2
4.1 lnc-MRPL39-38:2
5.0 lnc-MRPL39-38:2
5.1 LINC01687:8
5.2 LINC01687:16