Transcript: LINC01688:10

Basic information

LNCipedia transcript ID: LINC01688:10 
HGNC Gene Symbol: LINC01688    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1688
Ensembl Gene ID: ENSG00000227181
Ensembl Transcript ID: ENST00000435492
Location (hg38): chr1:182712862-182714544
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000347; ENST00000435492; ENST00000435492.1; RP11-317P15.3-001; OTTHUMT00000098468.1
Alternative gene names: XLOC_000486; linc-NPL; ENSG00000227181; RP11-317P15.3; ENSG00000227181.1; OTTHUMG00000041043.1; LINC01688


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.6252 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01688:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPL-1:2
3.1 lnc-NPL-1:2
4.0 lnc-NPL-1:2
4.1 lnc-NPL-1:2
5.0 lnc-NPL-1:2
5.1 LINC01688:5
5.2 LINC01688:10