Transcript: LINC01689:14

Basic information

LNCipedia transcript ID: LINC01689:14 
HGNC Gene Symbol: LINC01689    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1689
Ensembl Gene ID: ENSG00000224832
Ensembl Transcript ID: ENST00000416218
RefSeq ID: NR_109963
Location (hg38): chr21:24304550-24321377
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2007 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028891; ENST00000416218; ENST00000416218.1; AP000469.2-001; OTTHUMT00000171146.1; NONHSAT081444; NR_109963; NR_109963.1
Alternative gene names: XLOC_014030; linc-TMPRSS15-14; ENSG00000224832; AP000469.2; ENSG00000224832.1; OTTHUMG00000078332.1; LINC01689; LOC101927869; ENSG00000224832.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.2288 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01689:14 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-8:1
3.1 lnc-MRPL39-9:1
4.0 lnc-MRPL39-9:1
4.1 lnc-MRPL39-9:1
5.0 lnc-MRPL39-9:1
5.1 LINC01689:7
5.2 LINC01689:14