Transcript: LINC01690:5

Basic information

LNCipedia transcript ID: LINC01690:5 
HGNC Gene Symbol: LINC01690    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1690
Ensembl Gene ID: ENSG00000228961
Ensembl Transcript ID: ENST00000424837
RefSeq ID: NR_135522
Location (hg38): chr21:32958888-32960566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 576 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028833; ENST00000424837; ENST00000424837.1; AP000282.3-001; OTTHUMT00000139665.1; NONHSAT081758; NR_135522.1
Alternative gene names: XLOC_013918; linc-OLIG2-1; ENSG00000228961; AP000282.3; ENSG00000228961.1; OTTHUMG00000065034.1; LINC01690; LOC102724502


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.632 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01690:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf49-2:1
3.1 lnc-C21orf49-2:1
4.0 lnc-OLIG2-5:2
4.1 lnc-OLIG2-5:2
5.0 lnc-OLIG2-5:2
5.1 LINC01690:3
5.2 LINC01690:5