Transcript: LINC01696:7

Basic information

LNCipedia transcript ID: LINC01696:7 
HGNC Gene Symbol: LINC01696    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1696
Ensembl Gene ID: ENSG00000227940
Ensembl Transcript ID: ENST00000448988
RefSeq ID: NR_135085
Location (hg38): chr1:209325456-209328532
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000377; ENST00000448988; ENST00000448988.1; RP11-372M18.1-001; OTTHUMT00000088228.1; NONHSAT009203; NR_135085.1
Alternative gene names: XLOC_000547; linc-LOC642587-2; ENSG00000227940; RP11-372M18.1; ENSG00000227940.1; OTTHUMG00000036265.1; LINC01696; LOC105372897


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.9604 non-coding 
CPAT coding probability 15.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01696:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMK1G-3:2
3.1 lnc-CAMK1G-3:2
4.0 lnc-CAMK1G-3:2
4.1 lnc-CAMK1G-3:2
5.0 lnc-CAMK1G-3:2
5.1 LINC01696:4
5.2 LINC01696:7