Transcript: LINC01701:3

Basic information

LNCipedia transcript ID: LINC01701:3 
HGNC Gene Symbol: LINC01701    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1701
Ensembl Gene ID: ENSG00000232212
Ensembl Transcript ID: ENST00000419614
Location (hg38): chr1:189775465-189814918
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 451 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000355; ENST00000419614; ENST00000419614.1; RP11-398M15.1-001; OTTHUMT00000086267.1; NONHSAT008487
Alternative gene names: XLOC_000503; linc-RGS18-5; ENSG00000232212; RP11-398M15.1; ENSG00000232212.1; OTTHUMG00000035526.1; LINC01701


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.7012 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01701:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGS18-4:1
3.1 lnc-RGS18-7:1
4.0 lnc-RGS18-7:1
4.1 lnc-RGS18-7:1
5.0 lnc-RGS18-7:1
5.1 LINC01701:2
5.2 LINC01701:3