Transcript: LINC01708:22

Basic information

LNCipedia transcript ID: LINC01708:22 
LNCipedia gene ID: LINC01708
Location (hg38): chr1:99472362-99534015
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 495 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000586; ENST00000438829; ENST00000438829.1; RP11-413P11.1-001; OTTHUMT00000029680.1; NONHSAT004752
Alternative gene names: XLOC_000935; linc-LPPR5-2; ENSG00000224445; RP11-413P11.1; ENSG00000224445.1; OTTHUMG00000010769.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.0481 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01708:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRRS1-1:1
3.1 lnc-FRRS1-1:1
4.0 lnc-FRRS1-1:1
4.1 lnc-FRRS1-1:1
5.0 lnc-FRRS1-1:1
5.1 LINC01708:9
5.2 LINC01708:22