Transcript: LINC01708:23

Basic information

LNCipedia transcript ID: LINC01708:23 
HGNC Gene Symbol: LINC01708    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1708
Ensembl Gene ID: ENSG00000224445
Ensembl Transcript ID: ENST00000438829
Location (hg38): chr1:99472415-99534015
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438829.2
Alternative gene names: ENSG00000224445.2; RP11-413P11.1; ENSG00000224445.3; LINC01708


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.0481 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01708:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRRS1-1:2
4.0 lnc-FRRS1-1:2
4.1 lnc-FRRS1-1:2
5.0 lnc-FRRS1-1:2
5.1 LINC01708:10
5.2 LINC01708:23