Transcript: LINC01709:7

Basic information

LNCipedia transcript ID: LINC01709:7 
HGNC Gene Symbol: LINC01709    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1709
Ensembl Gene ID: ENSG00000226715
Ensembl Transcript ID: ENST00000635702
Location (hg38): chr1:101639586-101787572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1204 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635702.1
Alternative gene names: ENSG00000226715.2; RP11-411H5.1; LINC01709


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.0549 non-coding 
CPAT coding probability 6.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01709:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-S1PR1-4:4
4.1 lnc-S1PR1-4:4
5.0 lnc-S1PR1-4:4
5.1 LINC01709:3
5.2 LINC01709:7