Transcript: LINC01710:3

Basic information

LNCipedia transcript ID: LINC01710:3 
HGNC Gene Symbol: LINC01710    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1710
Ensembl Gene ID: ENSG00000225561
Ensembl Transcript ID: ENST00000446002
Location (hg38): chr1:218912757-218916184
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000731; ENST00000446002; ENST00000446002.1; RP11-412H9.2-001; OTTHUMT00000098810.1; NONHSAT009526
Alternative gene names: XLOC_001204; linc-GPATCH2-4; ENSG00000225561; RP11-412H9.2; ENSG00000225561.1; OTTHUMG00000041229.1; LINC01710


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.3509 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01710:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A10-6:1
3.1 lnc-SLC30A10-6:1
4.0 lnc-SLC30A10-6:1
4.1 lnc-SLC30A10-6:1
5.0 lnc-SLC30A10-6:1
5.1 LINC01710:2
5.2 LINC01710:3