Transcript: LINC01714:23

Basic information

LNCipedia transcript ID: LINC01714:23 
LNCipedia gene ID: LINC01714
Ensembl Gene ID: ENSG00000238290
Ensembl Transcript ID: ENST00000445300
Location (hg38): chr1:8026738-8122702
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2044 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445300; ENST00000445300.1; RP11-431K24.1-001; OTTHUMT00000004926.1
Alternative gene names: ENSG00000238290; RP11-431K24.1; ENSG00000238290.1; OTTHUMG00000001766.1; AL034417.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.6546 non-coding 
CPAT coding probability 10.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01714:23 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARK7-1:1
3.1 lnc-PARK7-1:1
4.0 lnc-PARK7-1:1
4.1 lnc-PARK7-1:1
5.0 lnc-PARK7-1:1
5.1 LINC01714:5
5.2 LINC01714:23