Transcript: LINC01714:29

Basic information

LNCipedia transcript ID: LINC01714:29 
LNCipedia gene ID: LINC01714
Location (hg38): chr1:8078410-8125175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3743 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000832; NONHSAT000735
Alternative gene names: XLOC_000042; linc-SLC45A1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5791 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01714:29 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PARK7-1:2
3.1 lnc-PARK7-1:2
4.0 lnc-PARK7-1:2
4.1 lnc-PARK7-1:2
5.0 lnc-PARK7-1:2
5.1 LINC01714:11
5.2 LINC01714:29