Transcript: LINC01714:36

Basic information

LNCipedia transcript ID: LINC01714:36 
HGNC Gene Symbol: LINC01714    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1714
Ensembl Gene ID: ENSG00000227634
Ensembl Transcript ID: ENST00000452982
RefSeq ID: NR_125998
Location (hg38): chr1:8208672-8215210
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000150; ENST00000452982; ENST00000452982.1; RP11-431K24.3-001; OTTHUMT00000004930.1; NONHSAT000740; NR_125998.1
Alternative gene names: XLOC_000043; linc-SLC45A1-1; ENSG00000227634; RP11-431K24.3; ENSG00000227634.1; OTTHUMG00000001769.1; ENSG00000227634.2; LINC01714; LOC102724539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.0469 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01714:36 no no no no

Available literature

  1. Malouf (2015), Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing., Mol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC45A1-1:1
3.1 lnc-SLC45A1-2:1
4.0 lnc-SLC45A1-2:1
4.1 lnc-PARK7-1:17
5.0 lnc-PARK7-1:17
5.1 LINC01714:18
5.2 LINC01714:36