Transcript: LINC01717:12

Basic information

LNCipedia transcript ID: LINC01717:12 
LNCipedia gene ID: LINC01717
Location (hg38): chr1:208729245-208736274
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 956 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00002226
Alternative gene names: XLOC_000545; linc-LOC642587-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.4849 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01717:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMK1G-5:5
3.1 lnc-CAMK1G-5:5
4.0 lnc-CAMK1G-5:5
4.1 lnc-CAMK1G-5:5
5.0 lnc-CAMK1G-5:5
5.1 LINC01717:6
5.2 LINC01717:12