Transcript: LINC01719:31

Basic information

LNCipedia transcript ID: LINC01719:31 
HGNC Gene Symbol: LINC01719    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1719
Ensembl Gene ID: ENSG00000233396
Ensembl Transcript ID: ENST00000612371
Location (hg38): chr1:146052638-146058678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 876 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419817; ENST00000419817.1; RP11-458D21.1-002; OTTHUMT00000100476.1; NONHSAT005892; ENST00000612371.4
Alternative gene names: ENSG00000233396; RP11-458D21.1; ENSG00000233396.1; OTTHUMG00000042244.2; ENSG00000233396.3; ENSG00000233396.7; LINC01719


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -17.8509 non-coding 
CPAT coding probability 9.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01719:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3GL-1:2
3.1 lnc-POLR3GL-1:2
4.0 lnc-POLR3GL-1:2
4.1 lnc-POLR3GL-1:2
5.0 lnc-POLR3GL-1:2
5.1 LINC01719:13
5.2 LINC01719:31