Transcript: LINC01722:6

Basic information

LNCipedia transcript ID: LINC01722:6 
HGNC Gene Symbol: LINC01722    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1722
Ensembl Gene ID: ENSG00000233048
Ensembl Transcript ID: ENST00000456265
Location (hg38): chr20:12865202-12952519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3033 bp
Exons: 12
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028007; ENST00000456265; ENST00000456265.1; RP5-1069C8.2-001; OTTHUMT00000078030.1; NONHSAT078659
Alternative gene names: XLOC_013657; linc-JAG1-7; ENSG00000233048; RP5-1069C8.2; ENSG00000233048.1; OTTHUMG00000031897.1; LINC01722


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.4191 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01722:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TASP1-1:1
3.1 lnc-TASP1-4:1
4.0 lnc-TASP1-4:1
4.1 lnc-TASP1-4:1
5.0 lnc-TASP1-4:1
5.1 LINC01722:2
5.2 LINC01722:6