Transcript: LINC01727:24

Basic information

LNCipedia transcript ID: LINC01727:24 
HGNC Gene Symbol: LINC01727    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1727
Ensembl Gene ID: ENSG00000279082
Ensembl Transcript ID: ENST00000624367
Location (hg38): chr20:21612548-21615935
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624367.3
Alternative gene names: ENSG00000279082.3; RP1-167O22.1; LINC01727


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -136.2191 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01727:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PAX1-1:11
4.1 lnc-PAX1-1:11
5.0 lnc-PAX1-1:11
5.1 LINC01727:12
5.2 LINC01727:24