Transcript: LINC01734:5

Basic information

LNCipedia transcript ID: LINC01734:5 
HGNC Gene Symbol: LINC01734    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1734
Ensembl Gene ID: ENSG00000230324
Ensembl Transcript ID: ENST00000412672
Location (hg38): chr20:39213777-39224748
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1518 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412672; ENST00000412672.1; RP4-705O1.1-001; OTTHUMT00000079223.2; NONHSAT079712
Alternative gene names: ENSG00000230324; RP4-705O1.1; ENSG00000230324.1; OTTHUMG00000032466.2; LINC01734


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.518 non-coding 
CPAT coding probability 8.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01734:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1755-4:2
3.1 lnc-KIAA1755-7:1
4.0 lnc-KIAA1755-7:1
4.1 lnc-KIAA1755-7:1
5.0 lnc-KIAA1755-7:1
5.1 LINC01734:3
5.2 LINC01734:5