Transcript: LINC01739:8

Basic information

LNCipedia transcript ID: LINC01739:8 
HGNC Gene Symbol: LINC01739    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1739
Ensembl Gene ID: ENSG00000229537
Ensembl Transcript ID: ENST00000425352
Location (hg38): chr1:63000497-63011268
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 490 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000533; ENST00000425352; ENST00000425352.1; RP11-5P4.1-002; OTTHUMT00000025347.1; NONHSAT003649; ENST00000425352.5
Alternative gene names: XLOC_000857; linc-DOCK7-1; ENSG00000229537; RP11-5P4.1; ENSG00000229537.1; OTTHUMG00000009147.1; ENSG00000229537.5; ENSG00000229537.6; LINC01739


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.8999 non-coding 
CPAT coding probability 20.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01739:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DOCK7-1:2
3.1 lnc-DOCK7-1:2
4.0 lnc-DOCK7-1:2
4.1 lnc-DOCK7-1:2
5.0 lnc-DOCK7-1:2
5.1 LINC01739:4
5.2 LINC01739:8