Transcript: LINC01740:4

Basic information

LNCipedia transcript ID: LINC01740:4 
HGNC Gene Symbol: LINC01740    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1740
Ensembl Gene ID: ENSG00000228067
Ensembl Transcript ID: ENST00000423842
Location (hg38): chr1:212545694-212556065
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000387; ENST00000423842; ENST00000423842.1; RP11-61J19.3-001; OTTHUMT00000089301.1; NONHSAT009375
Alternative gene names: XLOC_000554; linc-ATF3-2; ENSG00000228067; RP11-61J19.3; ENSG00000228067.1; OTTHUMG00000036749.1; LINC01740


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7671 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01740:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATF3-2:1
3.1 lnc-ATF3-2:1
4.0 lnc-ATF3-2:1
4.1 lnc-ATF3-2:1
5.0 lnc-ATF3-2:1
5.1 LINC01740:2
5.2 LINC01740:4