Transcript: LINC01743:4

Basic information

LNCipedia transcript ID: LINC01743:4 
HGNC Gene Symbol: LINC01743    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1743
Ensembl Gene ID: ENSG00000242042
Ensembl Transcript ID: ENST00000366308
RefSeq ID: NR_040002
Location (hg38): chr1:246516039-246524287
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 964 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000366308.2; RP11-690C23.2-001; OTTHUMT00000097598.2; NONHSAT010706; NR_040002; NR_040002.1
Alternative gene names: ENSG00000242042.1; RP11-690C23.2; OTTHUMG00000040555.2; LINC01743; LOC255654


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.0713 non-coding 
CPAT coding probability 17.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01743:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMYD3-1:1
4.0 lnc-SMYD3-1:1
4.1 lnc-SMYD3-1:1
5.0 lnc-SMYD3-1:1
5.1 LINC01743:2
5.2 LINC01743:4