Transcript: LINC01747:10

Basic information

LNCipedia transcript ID: LINC01747:10 
LNCipedia gene ID: LINC01747
Location (hg38): chr20:22684668-22685312
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028639; NONHSAT079007
Alternative gene names: XLOC_013686; linc-FOXA2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.2939 non-coding 
CPAT coding probability 2.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01747:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-4:2
3.1 lnc-FOXA2-4:2
4.0 lnc-FOXA2-4:2
4.1 lnc-FOXA2-4:2
5.0 lnc-FOXA2-4:2
5.1 LINC01747:4
5.2 LINC01747:10