Transcript: LINC01748:25

Basic information

LNCipedia transcript ID: LINC01748:25 
LNCipedia gene ID: LINC01748
Ensembl Gene ID: ENSG00000231252
Ensembl Transcript ID: ENST00000423403
RefSeq ID: NR_110628
Location (hg38): chr1:60659631-60825584
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2344 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000081; ENST00000423403; ENST00000423403.1; RP11-436K8.1-001; OTTHUMT00000023196.1; NONHSAT003592; NR_110628; NR_110628.1
Alternative gene names: XLOC_000856; linc-C1orf87-2; ENSG00000231252; RP11-436K8.1; ENSG00000231252.1; OTTHUMG00000008422.1; ENSG00000231252.2; AC099792.1; LOC101926964


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.4294 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01748:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf87-3:1
3.1 lnc-C1orf87-3:1
4.0 lnc-C1orf87-3:1
4.1 lnc-C1orf87-2:15
5.0 lnc-C1orf87-2:15
5.1 LINC01748:9
5.2 LINC01748:25