Transcript: LINC01748:26

Basic information

LNCipedia transcript ID: LINC01748:26 
LNCipedia gene ID: LINC01748
Location (hg38): chr1:60540249-60640491
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1796 bp
Exons: 8
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000531; ENST00000439156; ENST00000439156.1; RP11-776H12.1-001; OTTHUMT00000027657.1; NONHSAT003589
Alternative gene names: XLOC_000855; linc-C1orf87-1; ENSG00000226476; RP11-776H12.1; ENSG00000226476.1; OTTHUMG00000009978.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6268 non-coding 
CPAT coding probability 3.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01748:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf87-2:1
3.1 lnc-C1orf87-2:1
4.0 lnc-C1orf87-2:1
4.1 lnc-C1orf87-2:1
5.0 lnc-C1orf87-2:1
5.1 LINC01748:10
5.2 LINC01748:26