Transcript: LINC01749:6

Basic information

LNCipedia transcript ID: LINC01749:6 
LNCipedia gene ID: LINC01749
RefSeq ID: NR_033370
Location (hg38): chr20:63009383-63085071
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3366 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027837; NONHSAT080816; NR_033370; NR_033370.1
Alternative gene names: XLOC_013604; linc-BIRC7-4; LOC63930


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 69.2332 coding 
CPAT coding probability 61.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01749:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC17A9-4:1
3.1 lnc-SLC17A9-4:1
4.0 lnc-SLC17A9-4:1
4.1 lnc-SLC17A9-4:1
5.0 lnc-SLC17A9-4:1
5.1 LINC01749:2
5.2 LINC01749:6