Transcript: LINC01759:17

Basic information

LNCipedia transcript ID: LINC01759:17 
LNCipedia gene ID: LINC01759
Location (hg38): chr1:9181550-9194823
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4373 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234546.2|ENCT00000001056.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.9718 non-coding 
CPAT coding probability 25.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01759:17 no no no no

Available literature

  1. Grossi (2018), A lncRNA GUARDINg genome integrity., Nat. Cell Biol.
  2. Léveillé (2015), Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-H6PD-1:8
5.0 lnc-H6PD-1:8
5.1 LINC01759:2
5.2 LINC01759:17