Transcript: LINC01759:27

Basic information

LNCipedia transcript ID: LINC01759:27 
LNCipedia gene ID: LINC01759
Location (hg38): chr1:9182212-9183796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 269 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412639; ENST00000412639.1; RP3-510D11.2-001; OTTHUMT00000004915.1; NONHSAT000792
Alternative gene names: ENSG00000234546; RP3-510D11.2; ENSG00000234546.1; OTTHUMG00000001764.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01759:27 no no no no

Available literature

  1. Grossi (2018), A lncRNA GUARDINg genome integrity., Nat. Cell Biol.
  2. Léveillé (2015), Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-H6PD-1:1
3.1 lnc-H6PD-1:1
4.0 lnc-H6PD-1:1
4.1 lnc-H6PD-1:1
5.0 lnc-H6PD-1:1
5.1 LINC01759:13
5.2 LINC01759:27