Transcript: LINC01761:3

Basic information

LNCipedia transcript ID: LINC01761:3 
HGNC Gene Symbol: LINC01761    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1761
Ensembl Gene ID: ENSG00000233907
Ensembl Transcript ID: ENST00000424943
RefSeq ID: NR_033966
Location (hg38): chr1:95474737-95479356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2755 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000007; ENST00000424943; ENST00000424943.1; RP4-617C6.1-001; OTTHUMT00000030074.1; NONHSAT004671; NR_033966; NR_033966.1
Alternative gene names: XLOC_000309; linc-PTBP2-5; ENSG00000233907; RP4-617C6.1; ENSG00000233907.1; OTTHUMG00000010909.1; FLJ31662; LINC01761


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.706 non-coding 
CPAT coding probability 9.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01761:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RWDD3-3:1
3.1 lnc-RWDD3-4:1
4.0 lnc-RWDD3-4:1
4.1 lnc-RWDD3-4:1
5.0 lnc-RWDD3-4:1
5.1 LINC01761:2
5.2 LINC01761:3