Transcript: LINC01768:3

Basic information

LNCipedia transcript ID: LINC01768:3 
HGNC Gene Symbol: LINC01768    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1768
Ensembl Gene ID: ENSG00000228420
Ensembl Transcript ID: ENST00000453347
Location (hg38): chr1:109828355-109871436
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 476 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000271; ENST00000453347; ENST00000453347.1; RP4-735C1.6-001; OTTHUMT00000032165.1; NONHSAT005072
Alternative gene names: XLOC_000339; linc-CSF1; ENSG00000228420; RP4-735C1.6; ENSG00000228420.1; OTTHUMG00000011637.1; LINC01768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1307 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01768:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSF1-1:1
3.1 lnc-CSF1-2:1
4.0 lnc-CSF1-2:1
4.1 lnc-CSF1-2:1
5.0 lnc-CSF1-2:1
5.1 LINC01768:2
5.2 LINC01768:3