Transcript: LINC01774:3

Basic information

LNCipedia transcript ID: LINC01774:3 
HGNC Gene Symbol: LINC01774    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1774
Ensembl Gene ID: ENSG00000236950
Ensembl Transcript ID: ENST00000453569
Location (hg38): chr1:208972454-208975307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000376; ENST00000453569; ENST00000453569.1; RP5-1051D14.1-001; OTTHUMT00000088026.1; NONHSAT009180
Alternative gene names: XLOC_000546; linc-LOC642587-3; ENSG00000236950; RP5-1051D14.1; ENSG00000236950.1; OTTHUMG00000036137.1; LINC01774


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.8649 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01774:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CAMK1G-4:1
3.1 lnc-CAMK1G-4:1
4.0 lnc-CAMK1G-4:1
4.1 lnc-CAMK1G-4:1
5.0 lnc-CAMK1G-4:1
5.1 LINC01774:2
5.2 LINC01774:3