Transcript: LINC01777:12

Basic information

LNCipedia transcript ID: LINC01777:12 
LNCipedia gene ID: LINC01777
RefSeq ID: NR_027088
Location (hg38): chr1:4412051-4424684
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2074 bp
Exons: 6
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000003; NR_027088; NR_027088.1
Alternative gene names: XLOC_000033; linc-AJAP1-3; LOC284661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3776 non-coding 
CPAT coding probability 9.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01777:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AJAP1-4:1
3.1 lnc-AJAP1-4:2
4.0 lnc-AJAP1-4:2
4.1 lnc-AJAP1-4:2
5.0 lnc-AJAP1-4:2
5.1 LINC01777:3
5.2 LINC01777:12