Transcript: LINC01778:13

Basic information

LNCipedia transcript ID: LINC01778:13 
LNCipedia gene ID: LINC01778
Location (hg38): chr1:30824228-30833846
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000430320; ENST00000430320.1; RP1-65J11.1-002; OTTHUMT00000010559.2
Alternative gene names: ENSG00000223382; RP1-65J11.1; ENSG00000223382.1; OTTHUMG00000003749.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.9277 non-coding 
CPAT coding probability 3.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01778:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC17-2:1
3.1 lnc-ZCCHC17-3:1
4.0 lnc-ZCCHC17-3:1
4.1 lnc-ZCCHC17-3:1
5.0 lnc-ZCCHC17-3:1
5.1 LINC01778:2
5.2 LINC01778:13