Transcript: LINC01778:20

Basic information

LNCipedia transcript ID: LINC01778:20 
HGNC Gene Symbol: LINC01778    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1778
Ensembl Gene ID: ENSG00000223382
Ensembl Transcript ID: ENST00000634587
Location (hg38): chr1:30824627-30834276
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1172 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634587.1
Alternative gene names: ENSG00000223382.4; RP5-1125N11.2; LINC01778


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -84.9277 non-coding 
CPAT coding probability 3.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01778:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZCCHC17-3:10
4.1 lnc-ZCCHC17-3:10
5.0 lnc-ZCCHC17-3:10
5.1 LINC01778:9
5.2 LINC01778:20